PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556387.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 293aa    MW: 32905.1 Da    PI: 7.8626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-13108154354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L +++++ k+L
  XP_010556387.1 108 KSHSEAERRRRERINNHLSKLRSILPNT-----TKTDKASLLAEVIQHTKEL 154
                     79*************************9.....8************998877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.609105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-14109163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-14109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-12111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-4118157No hitNo description
Gene3DG3DSA:3.30.70.2606.5E-5192244No hitNo description
CDDcd048734.88E-10192262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MYSMRGEDCF RSLHNIQEYQ NQPTLPWTRP SFYPAMSSFG YSDLTRRDGF GSPIPSMDHH  60
HNHLQFLSEA LGPNMRPGSG LGWVGFGGEM GQMTAREIMD VKALAASKSH SEAERRRRER  120
INNHLSKLRS ILPNTTKTDK ASLLAEVIQH TKELKQQTSL IADTCPIPTE TDELTVDFSY  180
DDGDGNFVIK ASFCCQDRAD LMNDVIKALK ELRLQTRKAE ITTVGSRVKN VLFISGEETR  240
ADDEQKIYNR VSLIQAALKA VIEKCVPGDS NSDQSSLGGA KRQRTNNITN RCY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556387.10.0PREDICTED: transcription factor AIG1-like
SwissprotQ9LS081e-112BH032_ARATH; Transcription factor AIG1
TrEMBLV4KSD41e-113V4KSD4_EUTSA; Uncharacterized protein
STRINGAT3G25710.11e-109(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.11e-106basic helix-loop-helix 32